NFINtb - Gene Ontology

NFINtb Nothobranchius furzeri transcriptome browser

Functional annotation with Gene Ontology Slim

Gene Ontology aims to provide a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data.

Gene Ontology Slim is a cut-down version of Gene Ontology containing a subset of the whole Gene Ontology. They give a broader overview into functional annotation without going so much into detail.

Click on a term to get a description. Click on the numbers to get all transcript contigs with this term.

GO Mol. Function	Num. (%)	GO Biol. Process	Num. (%)	GO Cell. Component	Num. (%)
no Molecular Function GO annotation	141498 (66.2%)	no Biological Process GO annotation	162057 (75.9%)	no Cellular Component GO annotation	172157 (80.6%)
molecular_function	72123 (33.8%)	biological_process	51564 (24.1%)	cellular_component	41464 (19.4%)
binding	58033 (27.2%)	metabolic process	31975 (15.0%)	cell	37573 (17.6%)
protein binding	33887 (15.9%)	primary metabolic process	27574 (12.9%)	intracellular	26088 (12.2%)
catalytic activity	27773 (13.0%)	regulation of biological process	15732 (7.4%)	organelle	15186 (7.1%)
nucleic acid binding	16017 (7.5%)	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	14584 (6.8%)	cytoplasm	10198 (4.8%)
hydrolase activity	11129 (5.2%)	biosynthetic process	13172 (6.2%)	nucleus	8044 (3.8%)
nucleotide binding	10640 (5.0%)	protein metabolic process	11395 (5.3%)	protein complex	5469 (2.6%)
transferase activity	10100 (4.7%)	transport	8804 (4.1%)	plasma membrane	3316 (1.6%)
DNA binding	9637 (4.5%)	signal transduction	7630 (3.6%)	cytoskeleton	2655 (1.2%)
transporter activity	5075 (2.4%)	protein modification process	6169 (2.9%)	extracellular region	2336 (1.1%)
transcription regulator activity	4403 (2.1%)	transcription	6124 (2.9%)	mitochondrion	1840 (0.9%)
kinase activity	4177 (2.0%)	multicellular organismal development	4936 (2.3%)	endoplasmic reticulum	952 (0.4%)
signal transducer activity	3938 (1.8%)	DNA metabolic process	4827 (2.3%)	Golgi apparatus	940 (0.4%)
RNA binding	3632 (1.7%)	cellular component organization	4410 (2.1%)	ribosome	931 (0.4%)
protein kinase activity	3361 (1.6%)	catabolic process	3590 (1.7%)	nucleoplasm	928 (0.4%)
transcription factor activity	3358 (1.6%)	cell communication	3439 (1.6%)	cytosol	864 (0.4%)
calcium ion binding	3269 (1.5%)	ion transport	3027 (1.4%)	chromosome	744 (0.3%)
enzyme regulator activity	3249 (1.5%)	anatomical structure morphogenesis	2656 (1.2%)	proteinaceous extracellular matrix	604 (0.3%)
peptidase activity	2885 (1.4%)	organelle organization	2386 (1.1%)	extracellular space	572 (0.3%)
receptor activity	2592 (1.2%)	cell differentiation	2310 (1.1%)	microtubule organizing center	496 (0.2%)
structural molecule activity	1985 (0.9%)	response to stress	2259 (1.1%)	cytoplasmic membrane-bounded vesicle	482 (0.2%)
ion channel activity	1966 (0.9%)	protein transport	2061 (1.0%)	nucleolus	437 (0.2%)
receptor binding	1520 (0.7%)	carbohydrate metabolic process	1929 (0.9%)	endosome	295 (0.1%)
cytoskeletal protein binding	1435 (0.7%)	translation	1771 (0.8%)	nuclear envelope	248 (0.1%)
actin binding	1031 (0.5%)	embryonic development	1622 (0.8%)	external encapsulating structure	241 (0.1%)
motor activity	850 (0.4%)	lipid metabolic process	1438 (0.7%)	vacuole	238 (0.1%)
lipid binding	793 (0.4%)	cytoskeleton organization	1156 (0.5%)	nuclear chromosome	232 (0.1%)
phosphoprotein phosphatase activity	783 (0.4%)	cellular amino acid and derivative metabolic process	1127 (0.5%)	cell envelope	227 (0.1%)
carbohydrate binding	704 (0.3%)	death	975 (0.5%)	cilium	178 (0.1%)
electron carrier activity	684 (0.3%)	cell death	974 (0.5%)	lysosome	155 (0.1%)
nuclease activity	634 (0.3%)	cell cycle	969 (0.5%)	peroxisome	82 (0.0%)
translation factor activity, nucleic acid binding	331 (0.2%)	generation of precursor metabolites and energy	830 (0.4%)	plastid	48 (0.0%)
chromatin binding	206 (0.1%)	cell proliferation	746 (0.3%)	cell wall	22 (0.0%)
antioxidant activity	143 (0.1%)	growth	633 (0.3%)	lipid particle	12 (0.0%)
neurotransmitter transporter activity	140 (0.1%)	cellular homeostasis	624 (0.3%)	thylakoid	8 (0.0%)
oxygen binding	34 (0.0%)	reproduction	556 (0.3%)
translation regulator activity	15 (0.0%)	response to external stimulus	529 (0.2%)
nutrient reservoir activity	3 (0.0%)	response to endogenous stimulus	416 (0.2%)
protein tag	2 (0.0%)	behavior	400 (0.2%)
		response to abiotic stimulus	394 (0.2%)
		cell growth	333 (0.2%)
		cell-cell signaling	317 (0.1%)
		response to biotic stimulus	279 (0.1%)
		respiratory electron transport chain	239 (0.1%)
		regulation of gene expression, epigenetic	216 (0.1%)
		mitochondrion organization	181 (0.1%)
		viral reproduction	163 (0.1%)
		cell recognition	92 (0.0%)
		symbiosis, encompassing mutualism through parasitism	55 (0.0%)
		secondary metabolic process	31 (0.0%)
		mitochondrial translation	6 (0.0%)
		cytoplasm organization	4 (0.0%)

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