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• Database:  assembly 2010/05assembly 2013/06assembly 2011/09
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Choose program to use and database to search:

Program  blastn blastp blastx tblastn tblastx     Database N. furzeri GRZ cDNA 2011/09N. furzeri GRZ put. proteins 2011/09

Enter here your input data as sequence in FASTA format.   

Or load it from disk

Please read about FASTA format description

Search only a subsequence: from         to

Use optimized blast parameters: (details available here, overrides some of the parameters below)

The query sequence is filtered for low complexity regions by default.

Filter Low complexity Mask for lookup table only

Expect 10000 1000 1 1E-03 1E-07 1E-10 1E-20 1E-60 1E-100 1E-200    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities query-anchored no identities and blunt ends flat query-anchored, no identities and blunt ends BLAST XML Hit Table Hit Table with Comments

Descriptions 0 10 25 50 100 250 500    Alignments 0 10 25 50 100 250 500